Biomedical Literature Mining by Vinod D. Kumar, Hannah Jane Tipney

By Vinod D. Kumar, Hannah Jane Tipney

Biomedical Literature Mining, discusses the a number of aspects of recent biomedical literature mining and its many functions in genomics and structures biology. the amount is split into 3 sections targeting info retrieval, built-in text-mining methods and domain-specific mining tools. Written within the hugely winning Methods in Molecular Biology sequence structure, chapters comprise introductions to their respective themes, lists of the required fabrics and reagents, step by step, effectively reproducible laboratory protocols and key pointers on troubleshooting and warding off identified pitfalls.

Authoritative and functional, Biomedical Literature Mining is designed as an invaluable bioinformatics source in biomedical literature textual content mining for either these lengthy skilled in or solely new to, the field.

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1186/1742-5581-3-7 Falagas ME, Pitsouni EI, Malietzis GA et al (2008) Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses. FASEB J 22(2):338–342. : A comparison of WoS, Scopus and Google Scholar. Scientometrics 74(2):257–271 Web of science. Thomson Reuters. com/web-of-science/ Scopus: document search. Elsevier. url The Thomson Reuters journal selection process. Thomson Reuters. com/ essays/journal-selection-process/ Tuomilehto J, Lindstrom J, Eriksson JG et al (2001) Prevention of type 2 diabetes mellitus by changes in lifestyle among subjects with impaired glucose tolerance.

41. 42. 43. 44. 45. 46. 47. 48. 49. 50. Ritu Khare et al. retrieval. J Am Med Inform Assoc 16(1):32– 36. M2935 Errami M, Wren JD, Hicks JM et al (2007) eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. Nucleic Acids Res 35(Web Server issue):W12–W15. 1093/nar/gkm221 Fontaine JF, Barbosa-Silva A, Schaefer M et al (2009) MedlineRanker: flexible ranking of biomedical literature. Nucleic Acids Res 37(Web Server issue):W141–W146. 1093/nar/ gkp353 Ortuno FM, Rojas I, Andrade-Navarro MA et al (2013) Using cited references to improve the retrieval of related biomedical documents.

Database 2012:43. 1093/database/bas043 Neveol A, Wilbur WJ, Lu Z (2012) Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE. Database 2012:bas026. 1093/database/bas026 Lu Z, Kao HY, Wei CH et al (2011) The gene normalization task in BioCreative III. BMC Bioinformatics 12(Suppl 8):S2. 1186/1471-2105-12-S8-S2 Van Landeghem S, Bjorne J, Wei CH et al (2013) Large-scale event extraction from literature with multi-level gene normalization. PloS One 8(4):e55814.

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